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Video s3
    Details
    Presenter(s)
    Payam Sadeghi Shabestari Headshot
    Affiliation
    Affiliation
    ETH Zürich
    Country
    Author(s)
    Affiliation
    Affiliation
    ETH Zürich
    Affiliation
    Affiliation
    ETH Zürich
    Display Name
    Sreedhar Kumar
    Affiliation
    Affiliation
    ETH Zürich
    Affiliation
    Affiliation
    Politecnico di Milano
    Affiliation
    Affiliation
    ETH Zürich
    Abstract

    In extracellular neural electrophysiology, individual spikes have to be assigned to their cell of origin in a procedure called “spike sorting”. Spike sorting is an unsupervised problem, since no ground-truth information is generally available. Here, we focus on improving spike sorting performance, particularly during periods of high synchronous activity or so-called “bursting”. Bursting entails systematic changes in spike shapes and amplitudes and remains a challenge for current spike sorting schemes. We use realistic simulated bursting recordings of high-density micro-electrode arrays (HD-MEAs) and we present a fully automated algorithm based on template matching with a focus on recovering missed spikes during bursts. To compare and benchmark spike-sorting performance after applying our method, we used ground-truth information of simulated recordings. We show that our approach can be effective in improving spike sorting performance during bursting. Further validation with experimental data is necessary.

    Slides
    • A Modulated Template-Matching Approach to Improve Spike Sorting of Bursting Neurons (application/pdf)